Cellular Circuits
Interactive framework · 2026

The unfolded protein response as a proteotoxic stress-resolution circuit

A framework in which environmental toxicants act as proteotoxic inputs, IRE1α, PERK and ATF6 decode ER stress into immune outcomes, and failed resolution can shift immune and barrier cells toward persistent dysfunction.

Journal Chemico-Biological Interactions, 440 (2026) 112392 Accepted 18 October 2026 Published 19 October 2026 DOI 10.1016/j.cbi.2026.112392 ↗

The key question is not only whether a toxicant activates the UPR, but whether the response resolves once the exposure passes, or stays engaged and branch-skewed.

Environmental immunotoxicityUnfolded protein responseER stressProteostasisStress resolution

Every figure, explorer and simulation on this page is a conceptual illustration of the review's framework, not an experimental measurement. The framework is offered as a hypothesis-generating structure, and the causal step linking failed resolution to immune dysfunction remains largely extrapolated from non-toxicological ER-stress models.

The framework at a glance

Three questions define proteotoxic stress resolution

The biology in plain language

How does the UPR turn toxicant exposure into an immune outcome?

What is already known, and what this review adds.

01 · THE PLAYERS

Three ER sensors read protein-folding stress

IRE1α, PERK and ATF6 sit in the endoplasmic reticulum membrane. When unfolded proteins accumulate, they signal through distinct but interacting programs that together make up the unfolded protein response (UPR).

02 · WHY IMMUNE CELLS

Immune cells live near their ER folding limit

Cytokine secretion, antibody production and antigen presentation place a heavy folding load on the ER. That makes immune and barrier cells unusually dependent on ER quality control, so the same proteotoxic stress can reshape their function before any cell death.

03 · WHAT SCIENCE ALREADY KNOWS

Toxicants activate the UPR, and the UPR shapes immunity

That individual environmental toxicants activate ER-stress markers is established, most robustly for particulate matter. That UPR signaling influences inflammation, antigen presentation and secretion is also established. Neither observation is claimed as novel here.

04 · WHAT THIS PAPER PROPOSES

Judge the outcome by how the signal resolves, not only whether it starts

The review proposes a branch-selective proteotoxic stress-resolution circuit: toxicants are proteotoxic inputs, IRE1α/PERK/ATF6 decode them into immune outputs, and failed resolution is one route by which exposure shifts immune cells toward persistent dysfunction.

Important: this is a conceptual framework from a review, not a newly validated pathway. ER-UPR signaling is treated as one module within a wider proteostasis-resolution network that also includes the integrated stress response, the mitochondrial UPR, the heat-shock response, proteasomal degradation and autophagy. It does not imply that all immunotoxicity is mediated by ER stress.

Read further: the published proteotoxic stress-resolution review.

A cell under proteotoxic stress

Interactive 3D model

Follow one immune cell as a toxicant perturbs its endoplasmic reticulum, the three UPR branches decode the stress, and the response either resolves or fails. Switch to the ER close-up to see IRE1α, PERK and ATF6 at the membrane. Drag to rotate.

Toxicant IRE1α PERK ATF6 Misfolded protein

System architecture · Table 1

Three non-interchangeable UPR branches

IRE1α, PERK and ATF6 are distinct modules that decode ER stress into different immune-relevant outputs. Select a branch to see its role and outputs.

Proteotoxic inputs · Table 2

Six toxicant classes, graded by evidence

Toxicants should not be treated as interchangeable ER stressors. Select a class to see its proteotoxic signature and the strength of evidence for UPR engagement, immune outcome and resolution.

Grades denote the directness and consistency of the available evidence, not the magnitude or toxicological importance of the effect. Strong: branch-resolved or perturbation evidence in exposure-relevant models. Moderate: consistent marker-level evidence or one well-controlled model. Limited: few studies, indirect readouts or non-immune systems. Sparse: no direct evidence.

Cell-type decoding · Fig. 2

The same branches, different immune meaning per cell

IRE1α, PERK and ATF6 generate distinct outputs depending on cell type and stress context. Select a cell type to decode its dominant immune consequence.

Resolution architecture · Fig. 3

Adaptive resolution versus failed resolution

Resolution is an active restoration process, not a passive decline. The outcome depends on stress duration, branch dynamics and whether ER proteostasis is restored.

Adaptive resolution

UPR signaling is transient and resolves, returning immune function toward baseline.

  • ERAD, proteasomal clearance, autophagy and ER-phagy remove misfolded proteins and excess stress-expanded ER
  • Ca²⁺ and redox balance normalize; translation recovers through GADD34-mediated eIF2α dephosphorylation
  • IRE1α-XBP1 restores secretory capacity in high-demand cells
  • Cytokine secretion, antigen presentation, antibody secretion and barrier function are restored

Failed resolution

Unfolded-protein burden persists and drives sustained or branch-skewed signaling.

  • Persistent or excessive IRE1α signaling through RIDD, XBP1s and TRAF2–ASK1-JNK / NF-κB
  • Prolonged PERK-ISR signaling suppresses cytokine protein synthesis; premature recovery reimposes ER burden
  • Persistent cytokine signaling, impaired antigen presentation, secretory collapse
  • Immunosuppressive function, T-cell dysfunction, epithelial barrier disruption and apoptosis
Resolution lab

What happens across repeated low-dose exposures?

The framework predicts that incomplete recovery between pulses, not total dose, shifts cells toward altered setpoints. Adjust the pulse pattern and recovery capacity to see the effect.

60%
55%
Time between pulses, relative to the recovery half-time.
60%
How fast ER proteostasis and function return between pulses.
5
Adaptive resilience

Recovery keeps pace with exposure

Each pulse resolves before the next arrives, so the baseline setpoint is preserved.

Residual stress before final pulse18%
Baseline drift12%
HighBaseExposures →Time
Failure analysis · Table 3

Distinct failures converge on persistent dysfunction

Different disruptions within the resolution architecture produce recognizable failure modes. Select one to see the basis and its effect on immune dynamics.

What to measure · Fig. 3 readouts

Activation, resolution and function must all be read

Activation markers alone cannot distinguish transient adaptive stress from persistent immunotoxic signaling. The framework asks for all three layers, time-resolved.

Activation markers

  • XBP1s
  • Phospho-IRE1α
  • Phospho-eIF2α
  • ATF4
  • CHOP
  • Cleaved ATF6
  • BiP / GRP78

Resolution markers

  • Return-to-baseline time
  • Signal half-life
  • ERAD markers
  • ER-phagy markers
  • Autophagic flux
  • Protein-synthesis recovery
  • Ca²⁺ / redox normalization
  • Secretory restoration

Functional immune outputs

  • Cytokine secretion
  • Antigen presentation
  • Antibody secretion
  • T-cell effector function
  • Epithelial barrier function
  • Viability
Experimental agenda · Section 3.8.6

Four priority experiments

Not all predictions are equally tractable. Four define the most immediate agenda, and across all of them the common requirement is to report the recovery phase and the branch, not only the peak and the marker.

PRIORITY 01

Measure recovery kinetics directly

Sample after exposure withdrawal, not only during it. Report the recovery half-time of each branch and the inter-exposure interval below which recovery becomes incomplete, together with the fraction that fails to return.

PRIORITY 02

Repeated low-dose vs dose-matched single exposure

Hold cumulative dose constant and vary the interval between pulses relative to the measured recovery half-time, so incomplete recovery rather than total dose becomes the manipulated variable.

PRIORITY 03

Mixed exposures by sensing mechanism

Pair a membrane-perturbing toxicant with a misfolding-inducing one, since IRE1 senses bilayer stress while ATF6 responds to luminal and sphingolipid inputs. Test whether co-exposure extends the recovery period disproportionately.

PRIORITY 04

Map cell-type vulnerability

Profile exposed tissue at single-cell resolution with paired functional output, to identify which high-secretory or barrier populations fail first and whether failure tracks secretory load, branch bias or resolution capacity.

Evidence provenance · Section 3.11

What is observed, extrapolated, or predicted?

The framework's three central claims rest on different bodies of research. Switch between them to keep direct observation apart from inference.